Pokemon Fushigi no Dungeon: Toki no Tankentai, Yami no Tankentai

Based on Nintendo DS game; Pokémon Mystery Dungeon 2: Time &amp; Darkness. 
(Source: AniDB) 

Pokemon Diamond & Pearl

After defeating Pyramid King Jindai and declining the offer to be a Frontier Brain, Satoshi sets off to travel through the far away land of Sinnoh. Once he gets there, he meets up with Hikari, a local trainer from the region, and they decide to travel together.

Pokemon Fushigi no Dungeon: Sora no Tankentai - Toki to Yami wo Meguru Saigo no Bouken

The Pokédans team's adventure begins one day when a boy, who has transformed from a human into a Pocchama (Piplup) creature in the world where Pokémon live, meets a Hikozaru (Chimchar) creature. The team joins a Juptile (Grovyle) and go to the "Lost Continent" to save the world with the "Time Gears."
(Source: ANN)

Pokémon Fushigi no Dungeon: Honoo no Tankentai

The manga is based on the Pokémon Mystery Dungeon: Explorers of Time and Explorers of Darkness games.

The story revolves around Honō, an amnesiac human who wakes up as a Chimchar. He meets a cowardly Totodile, and together, they form Team Blaze.

(Source: Bulbapedia)

Pokemon Mystery Dungeon: Explorers of Time and Darkness

Rank #5480 (Most Popular Anime)

Rank #8797 (Highest Rated Anime)

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Pokemon Diamond & Pearl

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Pokemon Fushigi no Dungeon: Sora no Tankentai - Toki to Yami wo Meguru Saigo no Bouken

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Pokémon Fushigi no Dungeon: Honoo no Tankentai